Serialized Form

Package ij

Class ij.ImageJ extends java.awt.Frame implements Serializable

Serialized Fields

toolbar

Toolbar toolbar

statusBar

java.awt.Panel statusBar

progressBar

ProgressBar progressBar

statusLine

java.awt.Label statusLine

firstTime

boolean firstTime

applet

java.applet.Applet applet

classes

java.util.Vector classes

exitWhenQuitting

boolean exitWhenQuitting

quitting

boolean quitting

keyPressedTime

long keyPressedTime

actionPerformedTime

long actionPerformedTime

lastKeyCommand

java.lang.String lastKeyCommand

embedded

boolean embedded

hotkey

boolean hotkey

Class ij.ImageJApplet extends java.applet.Applet implements Serializable

Package ij.gui

Class ij.gui.FreehandRoi extends PolygonRoi implements Serializable

Class ij.gui.GenericDialog extends java.awt.Dialog implements Serializable

Serialized Fields

numberField

java.util.Vector numberField

stringField

java.util.Vector stringField

checkbox

java.util.Vector checkbox

choice

java.util.Vector choice

slider

java.util.Vector slider

textArea1

java.awt.TextArea textArea1

textArea2

java.awt.TextArea textArea2

defaultValues

java.util.Vector defaultValues

defaultText

java.util.Vector defaultText

theLabel

java.awt.Component theLabel

cancel

java.awt.Button cancel

okay

java.awt.Button okay

wasCanceled

boolean wasCanceled

wasOKed

boolean wasOKed

y

int y

nfIndex

int nfIndex

sfIndex

int sfIndex

cbIndex

int cbIndex

choiceIndex

int choiceIndex

grid

java.awt.GridBagLayout grid

c

java.awt.GridBagConstraints c

firstNumericField

boolean firstNumericField

firstSlider

boolean firstSlider

invalidNumber

boolean invalidNumber

errorMessage

java.lang.String errorMessage

firstPaint

boolean firstPaint

labels

java.util.Hashtable labels

macro

boolean macro

macroOptions

java.lang.String macroOptions

topInset

int topInset

leftInset

int leftInset

bottomInset

int bottomInset

customInsets

boolean customInsets

sliderIndexes

int[] sliderIndexes

previewCheckbox

java.awt.Checkbox previewCheckbox

dialogListeners

java.util.Vector dialogListeners

pfr

PlugInFilterRunner pfr

previewLabel

java.lang.String previewLabel

recorderOn

boolean recorderOn

Class ij.gui.HistogramWindow extends ImageWindow implements Serializable

Serialized Fields

stats

ImageStatistics stats

histogram

int[] histogram

lut

LookUpTable lut

frame

java.awt.Rectangle frame

list

java.awt.Button list

save

java.awt.Button save

copy

java.awt.Button copy

log

java.awt.Button log

value

java.awt.Label value

count

java.awt.Label count

decimalPlaces

int decimalPlaces

digits

int digits

newMaxCount

int newMaxCount

plotScale

int plotScale

logScale

boolean logScale

cal

Calibration cal

yMax

int yMax

Class ij.gui.HTMLDialog extends javax.swing.JDialog implements Serializable

Class ij.gui.ImageCanvas extends java.awt.Canvas implements Serializable

Serialized Fields

imp

ImagePlus imp

imageUpdated

boolean imageUpdated

srcRect

java.awt.Rectangle srcRect

imageWidth

int imageWidth

imageHeight

int imageHeight

xMouse

int xMouse

yMouse

int yMouse

showCursorStatus

boolean showCursorStatus

sx2

int sx2

sy2

int sy2

disablePopupMenu

boolean disablePopupMenu

showAllROIs

boolean showAllROIs

labelRects

java.awt.Rectangle[] labelRects

maxBoundsReset

boolean maxBoundsReset

displayList

java.util.Vector displayList

labelListItems

boolean labelListItems

listColor

java.awt.Color listColor

listStroke

java.awt.BasicStroke listStroke

ij

ImageJ ij

magnification

double magnification

dstWidth

int dstWidth

dstHeight

int dstHeight

xMouseStart

int xMouseStart

yMouseStart

int yMouseStart

xSrcStart

int xSrcStart

ySrcStart

int ySrcStart

flags

int flags

offScreenImage

java.awt.Image offScreenImage

offScreenWidth

int offScreenWidth

offScreenHeight

int offScreenHeight

firstFrame

long firstFrame

frames

int frames

fps

int fps

count

int count

Class ij.gui.ImageWindow extends java.awt.Frame implements Serializable

Serialized Fields

imp

ImagePlus imp

ij

ImageJ ij

ic

ImageCanvas ic

initialMagnification

double initialMagnification

newWidth

int newWidth

newHeight

int newHeight

closed

boolean closed

newCanvas

boolean newCanvas

unzoomWhenMinimizing

boolean unzoomWhenMinimizing

maxBounds

java.awt.Rectangle maxBounds

textGap

int textGap

running

boolean running

This variable is set false if the user presses the escape key or closes the window.

running2

boolean running2

This variable is set false if the user clicks in this window, presses the escape key, or closes the window.

Class ij.gui.Line extends Roi implements Serializable

Serialized Fields

x1

int x1

y1

int y1

x2

int x2

y2

int y2

x1d

double x1d

y1d

double y1d

x2d

double x2d

y2d

double y2d

x1R

double x1R

y1R

double y1R

x2R

double x2R

y2R

double y2R

xHandleOffset

double xHandleOffset

yHandleOffset

double yHandleOffset

startxd

double startxd

startyd

double startyd

Class ij.gui.MessageDialog extends java.awt.Dialog implements Serializable

Serialized Fields

button

java.awt.Button button

label

MultiLineLabel label

Class ij.gui.MultiLineLabel extends java.awt.Canvas implements Serializable

Serialized Fields

lines

java.lang.String[] lines

num_lines

int num_lines

margin_width

int margin_width

margin_height

int margin_height

line_height

int line_height

line_ascent

int line_ascent

line_widths

int[] line_widths

max_width

int max_width

Class ij.gui.OvalRoi extends Roi implements Serializable

Class ij.gui.PlotWindow extends ImageWindow implements Serializable

Serialized Fields

list

java.awt.Button list

save

java.awt.Button save

copy

java.awt.Button copy

coordinates

java.awt.Label coordinates

font

java.awt.Font font

defaultDigits

int defaultDigits

realNumbers

boolean realNumbers

xdigits

int xdigits

ydigits

int ydigits

markSize

int markSize

plot

Plot plot

Class ij.gui.PointRoi extends PolygonRoi implements Serializable

Class ij.gui.PolygonRoi extends Roi implements Serializable

Serialized Fields

maxPoints

int maxPoints

xp

int[] xp

yp

int[] yp

xp2

int[] xp2

yp2

int[] yp2

nPoints

int nPoints

xSpline

int[] xSpline

ySpline

int[] ySpline

xScreenSpline

int[] xScreenSpline

yScreenSpline

int[] yScreenSpline

splinePoints

int splinePoints

clip

java.awt.Rectangle clip

angle1

double angle1

degrees

double degrees

xClipMin

int xClipMin

yClipMin

int yClipMin

xClipMax

int xClipMax

yClipMax

int yClipMax

userCreated

boolean userCreated

mouseUpTime

long mouseUpTime

Class ij.gui.ProgressBar extends java.awt.Canvas implements Serializable

Serialized Fields

canvasWidth

int canvasWidth

canvasHeight

int canvasHeight

x

int x

y

int y

width

int width

height

int height

percent

double percent

lastTime

long lastTime

showBar

boolean showBar

barColor

java.awt.Color barColor

fillColor

java.awt.Color fillColor

backgroundColor

java.awt.Color backgroundColor

frameBrighter

java.awt.Color frameBrighter

frameDarker

java.awt.Color frameDarker

Class ij.gui.Roi extends java.lang.Object implements Serializable

Serialized Fields

startX

int startX

startY

int startY

x

int x

y

int y

width

int width

height

int height

activeHandle

int activeHandle

state

int state

modState

int modState

type

int type

xMax

int xMax

yMax

int yMax

imp

ImagePlus imp

ic

ImageCanvas ic

oldX

int oldX

oldY

int oldY

oldWidth

int oldWidth

oldHeight

int oldHeight

clipX

int clipX

clipY

int clipY

clipWidth

int clipWidth

clipHeight

int clipHeight

clipboard

ImagePlus clipboard

constrain

boolean constrain

center

boolean center

updateFullWindow

boolean updateFullWindow

mag

double mag

name

java.lang.String name

cachedMask

ImageProcessor cachedMask

handleColor

java.awt.Color handleColor

instanceColor

java.awt.Color instanceColor

Class ij.gui.SaveChangesDialog extends java.awt.Dialog implements Serializable

Serialized Fields

dontSave

java.awt.Button dontSave

cancel

java.awt.Button cancel

save

java.awt.Button save

cancelPressed

boolean cancelPressed

savePressed

boolean savePressed

Class ij.gui.ShapeRoi extends Roi implements Serializable

Serialized Fields

shape

java.awt.Shape shape

The java.awt.Shape encapsulated by this object.

maxerror

double maxerror

The instance value of the maximum tolerance (MAXERROR) allowed in calculating the length of the curve segments of this ROI's shape.

flatness

double flatness

The instance value of the coefficient (FLATNESS) used to obtain a flattened version of this ROI's shape.

maxPoly

int maxPoly

The instance value of MAXPOLY.

flatten

boolean flatten

If true then methods that manipulate this ROI's shape will work on a flattened version of the shape.

forceTrace

boolean forceTrace

Flag which specifies how Roi objects will be constructed from closed (sub)paths having more than MAXPOLY and composed exclusively of line segments. If true then (sub)path will be parsed into a Roi.TRACED_ROI; else, into a Roi.FREEROI.

forceAngle

boolean forceAngle

Flag which specifies if Roi objects constructed from open (sub)paths composed of only two line segments will be of type Roi.ANGLE. If true then (sub)path will be parsed into a Roi.ANGLE; else, into a Roi.POLYLINE.

savedRois

java.util.Vector savedRois

Class ij.gui.StackWindow extends ImageWindow implements Serializable

Serialized Fields

sliceSelector

java.awt.Scrollbar sliceSelector

thread

java.lang.Thread thread

done

boolean done

slice

int slice

Class ij.gui.TextRoi extends Roi implements Serializable

Serialized Fields

theText

java.lang.String[] theText

previousMag

double previousMag

firstChar

boolean firstChar

firstMouseUp

boolean firstMouseUp

cline

int cline

Class ij.gui.Toolbar extends java.awt.Canvas implements Serializable

Serialized Fields

ps

java.awt.Dimension ps

down

boolean[] down

previous

int previous

x

int x

y

int y

xOffset

int xOffset

yOffset

int yOffset

mouseDownTime

long mouseDownTime

g

java.awt.Graphics g

mpPrevious

int mpPrevious

names

java.lang.String[] names

icons

java.lang.String[] icons

menus

java.awt.PopupMenu[] menus

pc

int pc

icon

java.lang.String icon

macroInstaller

MacroInstaller macroInstaller

startupTime

int startupTime

ovalPopup

java.awt.PopupMenu ovalPopup

linePopup

java.awt.PopupMenu linePopup

switchPopup

java.awt.PopupMenu switchPopup

ovalItem

java.awt.CheckboxMenuItem ovalItem

brushItem

java.awt.CheckboxMenuItem brushItem

straightLineItem

java.awt.CheckboxMenuItem straightLineItem

polyLineItem

java.awt.CheckboxMenuItem polyLineItem

freeLineItem

java.awt.CheckboxMenuItem freeLineItem

currentSet

java.lang.String currentSet

lineType

int lineType

gray

java.awt.Color gray

brighter

java.awt.Color brighter

darker

java.awt.Color darker

evenDarker

java.awt.Color evenDarker

triangleColor

java.awt.Color triangleColor

toolColor

java.awt.Color toolColor

Class ij.gui.TrimmedButton extends java.awt.Button implements Serializable

Serialized Fields

trim

int trim

Class ij.gui.YesNoCancelDialog extends java.awt.Dialog implements Serializable

Serialized Fields

yesB

java.awt.Button yesB

noB

java.awt.Button noB

cancelB

java.awt.Button cancelB

cancelPressed

boolean cancelPressed

yesPressed

boolean yesPressed

firstPaint

boolean firstPaint

Package ij.plugin.frame

Class ij.plugin.frame.ContrastAdjuster extends PlugInFrame implements Serializable

Serialized Fields

plot

ContrastPlot plot

thread

java.lang.Thread thread

minSliderValue

int minSliderValue

maxSliderValue

int maxSliderValue

brightnessValue

int brightnessValue

contrastValue

int contrastValue

sliderRange

int sliderRange

doAutoAdjust

boolean doAutoAdjust

doReset

boolean doReset

doSet

boolean doSet

doApplyLut

boolean doApplyLut

panel

java.awt.Panel panel

tPanel

java.awt.Panel tPanel

autoB

java.awt.Button autoB

resetB

java.awt.Button resetB

setB

java.awt.Button setB

applyB

java.awt.Button applyB

previousImageID

int previousImageID

previousType

int previousType

previousSlice

int previousSlice

previousSnapshot

java.lang.Object previousSnapshot

ij

ImageJ ij

min

double min

max

double max

previousMin

double previousMin

previousMax

double previousMax

defaultMin

double defaultMin

defaultMax

double defaultMax

contrast

int contrast

brightness

int brightness

RGBImage

boolean RGBImage

minSlider

java.awt.Scrollbar minSlider

maxSlider

java.awt.Scrollbar maxSlider

contrastSlider

java.awt.Scrollbar contrastSlider

brightnessSlider

java.awt.Scrollbar brightnessSlider

minLabel

java.awt.Label minLabel

maxLabel

java.awt.Label maxLabel

windowLabel

java.awt.Label windowLabel

levelLabel

java.awt.Label levelLabel

done

boolean done

autoThreshold

int autoThreshold

gridbag

java.awt.GridBagLayout gridbag

c

java.awt.GridBagConstraints c

y

int y

windowLevel

boolean windowLevel

balance

boolean balance

monoFont

java.awt.Font monoFont

sanFont

java.awt.Font sanFont

channels

int channels

choice

java.awt.Choice choice

Class ij.plugin.frame.Editor extends PlugInFrame implements Serializable

Serialized Fields

ta

java.awt.TextArea ta

path

java.lang.String path

changes

boolean changes

fileMenu

java.awt.Menu fileMenu

editMenu

java.awt.Menu editMenu

p

java.util.Properties p

macroStarts

int[] macroStarts

macroNames

java.lang.String[] macroNames

mb

java.awt.MenuBar mb

macrosMenu

java.awt.Menu macrosMenu

nMacros

int nMacros

pgm

Program pgm

eventCount

int eventCount

shortcutsInUse

java.lang.String shortcutsInUse

inUseCount

int inUseCount

installer

MacroInstaller installer

dontShowWindow

boolean dontShowWindow

sizes

int[] sizes

fontSize

int fontSize

monospaced

java.awt.CheckboxMenuItem monospaced

isMacroWindow

boolean isMacroWindow

Class ij.plugin.frame.Fitter extends PlugInFrame implements Serializable

Serialized Fields

fit

java.awt.Choice fit

doIt

java.awt.Button doIt

open

java.awt.Button open

apply

java.awt.Button apply

settings

java.awt.Checkbox settings

fitTypeStr

java.lang.String fitTypeStr

textArea

java.awt.TextArea textArea

dx

double[] dx

dy

double[] dy

x

double[] x

y

double[] y

Class ij.plugin.frame.Fonts extends PlugInFrame implements Serializable

Serialized Fields

panel

java.awt.Panel panel

font

java.awt.Choice font

size

java.awt.Choice size

style

java.awt.Choice style

checkbox

java.awt.Checkbox checkbox

Class ij.plugin.frame.LineWidthAdjuster extends PlugInFrame implements Serializable

Serialized Fields

sliderRange

int sliderRange

slider

java.awt.Scrollbar slider

value

int value

setText

boolean setText

thread

java.lang.Thread thread

done

boolean done

tf

java.awt.TextField tf

Class ij.plugin.frame.PasteController extends PlugInFrame implements Serializable

Serialized Fields

panel

java.awt.Panel panel

pasteMode

java.awt.Choice pasteMode

Class ij.plugin.frame.PlugInFrame extends java.awt.Frame implements Serializable

Serialized Fields

title

java.lang.String title

Class ij.plugin.frame.Recorder extends PlugInFrame implements Serializable

Serialized Fields

makeMacro

java.awt.Button makeMacro

help

java.awt.Button help

macroName

java.awt.TextField macroName

fitTypeStr

java.lang.String fitTypeStr

Class ij.plugin.frame.RoiManager extends PlugInFrame implements Serializable

Serialized Fields

panel

java.awt.Panel panel

list

java.awt.List list

rois

java.util.Hashtable rois

roiCopy

Roi roiCopy

canceled

boolean canceled

macro

boolean macro

ignoreInterrupts

boolean ignoreInterrupts

pm

java.awt.PopupMenu pm

moreButton

java.awt.Button moreButton

Class ij.plugin.frame.ThresholdAdjuster extends PlugInFrame implements Serializable

Serialized Fields

plot

ThresholdPlot plot

thread

java.lang.Thread thread

minValue

int minValue

maxValue

int maxValue

sliderRange

int sliderRange

doAutoAdjust

boolean doAutoAdjust

doReset

boolean doReset

doApplyLut

boolean doApplyLut

doStateChange

boolean doStateChange

doSet

boolean doSet

panel

java.awt.Panel panel

autoB

java.awt.Button autoB

resetB

java.awt.Button resetB

applyB

java.awt.Button applyB

setB

java.awt.Button setB

previousImageID

int previousImageID

previousImageType

int previousImageType

previousMin

double previousMin

previousMax

double previousMax

ij

ImageJ ij

minThreshold

double minThreshold

maxThreshold

double maxThreshold

minSlider

java.awt.Scrollbar minSlider

maxSlider

java.awt.Scrollbar maxSlider

label1

java.awt.Label label1

label2

java.awt.Label label2

done

boolean done

invertedLut

boolean invertedLut

lutColor

int lutColor

firstActivation

boolean firstActivation

Package ij.text

Class ij.text.TextPanel extends java.awt.Panel implements Serializable

Serialized Fields

iGridWidth

int iGridWidth

iGridHeight

int iGridHeight

iX

int iX

iY

int iY

sColHead

java.lang.String[] sColHead

vData

java.util.Vector vData

iColWidth

int[] iColWidth

iColCount

int iColCount

iRowCount

int iRowCount

iRowHeight

int iRowHeight

iFirstRow

int iFirstRow

sbHoriz

java.awt.Scrollbar sbHoriz

sbVert

java.awt.Scrollbar sbVert

iSbWidth

int iSbWidth

iSbHeight

int iSbHeight

bDrag

boolean bDrag

iXDrag

int iXDrag

iColDrag

int iColDrag

headings

boolean headings

title

java.lang.String title

labels

java.lang.String labels

keyListener

java.awt.event.KeyListener keyListener

resizeCursor

java.awt.Cursor resizeCursor

defaultCursor

java.awt.Cursor defaultCursor

selStart

int selStart

selEnd

int selEnd

selOrigin

int selOrigin

selLine

int selLine

tc

TextCanvas tc

pm

java.awt.PopupMenu pm

columnsManuallyAdjusted

boolean columnsManuallyAdjusted

mouseDownTime

long mouseDownTime

filePath

java.lang.String filePath

rt

ResultsTable rt

unsavedLines

boolean unsavedLines

Class ij.text.TextWindow extends java.awt.Frame implements Serializable

Serialized Fields

textPanel

TextPanel textPanel

antialiased

java.awt.CheckboxMenuItem antialiased

sizes

int[] sizes

fontSize

int fontSize