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## Uses of Class
ij.ImagePlus

Packages that use ImagePlus
ij |
ij.gui |
ij.io |
ij.macro |
ij.measure |
ij.plugin |
ij.plugin.filter |
ij.plugin.frame |
ij.process |

Uses of ImagePlus in ij

Subclasses of ImagePlus in ij
`class` | `CompositeImage`

Methods in ij that return ImagePlus
`static ImagePlus` | `WindowManager.getCurrentImage()` Returns the active ImagePlus.
`static ImagePlus` | `WindowManager.getImage(int imageID)` For IDs less than zero, returns the ImagePlus with the specified ID.
`static ImagePlus` | `WindowManager.getImage(java.lang.String title)` Returns the first image that has the specified title or null if it is not found.
`static ImagePlus` | `WindowManager.getTempCurrentImage()` Returns `tempCurrentImage`, which may be null.
`ImagePlus` | `ImagePlus.createImagePlus()` Returns a new ImagePlus with this ImagePlus' attributes (e.g.
`static ImagePlus` | `ImagePlus.getClipboard()` Returns the internal clipboard or null if the internal clipboard is empty.
`static ImagePlus` | `IJ.getImage()` Returns a reference to the active image.
`static ImagePlus` | `IJ.openImage(java.lang.String path)` Open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image and returns an ImagePlus object if successful.
`static ImagePlus` | `IJ.createImage(java.lang.String title, java.lang.String type, int width, int height, int depth)` Creates a new imagePlus.

Methods in ij with parameters of type ImagePlus
`static void` | `WindowManager.setTempCurrentImage(ImagePlus imp)` Makes the specified image temporarily the active image.
`static void` | `Undo.setup(int what, ImagePlus imp)`
`void` | `ImagePlus.copyScale(ImagePlus imp)` Copies the calibration of the specified image to this image.
`void` | `ImageListener.imageOpened(ImagePlus imp)`
`void` | `ImageListener.imageClosed(ImagePlus imp)`
`void` | `ImageListener.imageUpdated(ImagePlus imp)`
`static void` | `IJ.showTime(ImagePlus imp, long start, java.lang.String str)`
`static void` | `IJ.showTime(ImagePlus imp, long start, java.lang.String str, int nslices)`
`static int` | `IJ.setupDialog(ImagePlus imp, int flags)` Displays a "Process all slices?" dialog.

Constructors in ij with parameters of type ImagePlus
`Executer(java.lang.String cmd, ImagePlus ignored)` Create an Executer that runs the specified menu command in a separate thread using the active image image.
`CompositeImage(ImagePlus imp, int channels)`

Uses of ImagePlus in ij.gui

Fields in ij.gui declared as ImagePlus
`protected ImagePlus` | `Roi.imp`
`protected ImagePlus` | `Roi.clipboard`
`protected ImagePlus` | `ProfilePlot.imp`
`protected ImagePlus` | `ImageWindow.imp`
`protected ImagePlus` | `ImageCanvas.imp`

Methods in ij.gui that return ImagePlus
`ImagePlus` | `Plot.getImagePlus()` Returns the plot as an ImagePlus.
`static ImagePlus` | `NewImage.createByteImage(java.lang.String title, int width, int height, int slices, int options)`
`static ImagePlus` | `NewImage.createRGBImage(java.lang.String title, int width, int height, int slices, int options)`
`static ImagePlus` | `NewImage.createShortImage(java.lang.String title, int width, int height, int slices, int options)` Creates an unsigned short image.
`static ImagePlus` | `NewImage.createUnsignedShortImage(java.lang.String title, int width, int height, int slices, int options)` Obsolete.
`static ImagePlus` | `NewImage.createFloatImage(java.lang.String title, int width, int height, int slices, int options)`
`static ImagePlus` | `NewImage.createImage(java.lang.String title, int width, int height, int nSlices, int bitDepth, int options)`
`ImagePlus` | `ImageWindow.getImagePlus()`

Methods in ij.gui with parameters of type ImagePlus
`void` | `Roi.setImage(ImagePlus imp)`
`void` | `Roi.startPaste(ImagePlus clipboard)`
`void` | `ImageWindow.updateImage(ImagePlus imp)`
`void` | `HistogramWindow.showHistogram(ImagePlus imp, int bins)` Draws the histogram using the specified title and number of bins.
`void` | `HistogramWindow.showHistogram(ImagePlus imp, int bins, double histMin, double histMax)` Draws the histogram using the specified title, number of bins and histogram range.
`void` | `HistogramWindow.showHistogram(ImagePlus imp, ImageStatistics stats)` Draws the histogram using the specified title and ImageStatistics.

Constructors in ij.gui with parameters of type ImagePlus
`TextRoi(int x, int y, ImagePlus imp)`
`StackWindow(ImagePlus imp)`
`StackWindow(ImagePlus imp, ImageCanvas ic)`
`Roi(int sx, int sy, ImagePlus imp)` Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.
`Roi(int x, int y, int width, int height, ImagePlus imp)` Obsolete
`ProfilePlot(ImagePlus imp)`
`ProfilePlot(ImagePlus imp, boolean averageHorizontally)`
`PolygonRoi(int[] xPoints, int[] yPoints, int nPoints, ImagePlus imp, int type)` Obsolete
`PolygonRoi(int sx, int sy, ImagePlus imp)` Starts the process of creating a new user-generated polygon or polyline ROI.
`PointRoi(int sx, int sy, ImagePlus imp)` Creates a new PointRoi using the specified screen coordinates.
`OvalRoi(int x, int y, ImagePlus imp)` Starts the process of creating a user-defined OvalRoi.
`OvalRoi(int x, int y, int width, int height, ImagePlus imp)` Obsolete
`Line(int sx, int sy, ImagePlus imp)` Starts the process of creating a new user-generated straight line selection.
`Line(int ox1, int oy1, int ox2, int oy2, ImagePlus imp)` Obsolete
`ImageWindow(ImagePlus imp)`
`ImageWindow(ImagePlus imp, ImageCanvas ic)`
`ImageCanvas(ImagePlus imp)`
`HistogramWindow(ImagePlus imp)` Displays a histogram using the title "Histogram of ImageName".
`HistogramWindow(java.lang.String title, ImagePlus imp, int bins)` Displays a histogram using the specified title and number of bins.
`HistogramWindow(java.lang.String title, ImagePlus imp, int bins, double histMin, double histMax)` Displays a histogram using the specified title, number of bins and histogram range.
`HistogramWindow(java.lang.String title, ImagePlus imp, int bins, double histMin, double histMax, int yMax)` Displays a histogram using the specified title, number of bins, histogram range and yMax.
`HistogramWindow(java.lang.String title, ImagePlus imp, ImageStatistics stats)` Displays a histogram using the specified title and ImageStatistics.
`FreehandRoi(int sx, int sy, ImagePlus imp)`

Uses of ImagePlus in ij.io

Methods in ij.io that return ImagePlus
`ImagePlus` | `Opener.openImage(java.lang.String directory, java.lang.String name)` Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.
`ImagePlus` | `Opener.openImage(java.lang.String path)` Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg.
`ImagePlus` | `Opener.openURL(java.lang.String url)` Attempts to open the specified url as a tiff, zip compressed tiff, dicom, gif or jpeg.
`ImagePlus` | `Opener.openTiffStack(FileInfo[] info)` Attemps to open a tiff file as a stack.
`ImagePlus` | `Opener.openTiff(java.lang.String directory, java.lang.String name)` Attempts to open the specified file as a tiff.
`ImagePlus` | `Opener.openTiff(java.io.InputStream in, java.lang.String name)` Attempts to open the specified inputStream as a TIFF, returning an ImagePlus object if successful.
`ImagePlus` | `Opener.openZip(java.lang.String path)` Opens a single TIFF or DICOM contained in a ZIP archive, or a ZIPed collection of ".roi" files created by the ROI manager.
`ImagePlus` | `FileOpener.open(boolean show)` Opens the image.

Methods in ij.io with parameters of type ImagePlus
`static void` | `Opener.convertGrayJpegTo8Bits(ImagePlus imp)` If this image is grayscale, convert it to 8-bits.
`static boolean` | `FileSaver.okForGif(ImagePlus imp)`
`static boolean` | `FileSaver.okForJpeg(ImagePlus imp)` Always returns true.
`static boolean` | `FileSaver.okForFits(ImagePlus imp)`
`void` | `FileOpener.revertToSaved(ImagePlus imp)` Restores original disk or network version of image.

Constructors in ij.io with parameters of type ImagePlus
`FileSaver(ImagePlus imp)` Constructs a FileSaver from an ImagePlus.

Uses of ImagePlus in ij.macro

Methods in ij.macro that return ImagePlus
`static ImagePlus` | `Interpreter.getBatchModeImage(int id)`
`static ImagePlus` | `Interpreter.getLastBatchModeImage()`

Methods in ij.macro with parameters of type ImagePlus
`static void` | `Interpreter.addBatchModeImage(ImagePlus imp)`
`static void` | `Interpreter.removeBatchModeImage(ImagePlus imp)`

Uses of ImagePlus in ij.measure

Methods in ij.measure with parameters of type ImagePlus
`void` | `Calibration.setImage(ImagePlus imp)` Disables the density calibation if the specified image has a differenent bit depth.

Constructors in ij.measure with parameters of type ImagePlus
`Calibration(ImagePlus imp)` Constructs a new Calibration object using the default values.

Uses of ImagePlus in ij.plugin

Subclasses of ImagePlus in ij.plugin
`class` | `BMP_Reader` This plugin reads BMP files.
`class` | `ColorPicker` Implements the Image/Color/Color Picker command.
`class` | `DICOM` This plugin decodes DICOM files.
`class` | `FITS_Reader` Opens and displays FITS images.
`class` | `LutLoader` Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
`class` | `PGM_Reader` This plugin opens PxM format images.

Methods in ij.plugin that return ImagePlus
`ImagePlus` | `ZProjector.getProjection()` Retrieve results of most recent projection operation.
`ImagePlus` | `Slicer.reslice(ImagePlus imp)`

Methods in ij.plugin with parameters of type ImagePlus
`void` | `ZProjector.setImage(ImagePlus imp)` Explicitly set image to be projected.
`void` | `StackEditor.convertStackToImages(ImagePlus imp)`
`ImagePlus` | `Slicer.reslice(ImagePlus imp)`
`void` | `MontageMaker.makeMontage(ImagePlus imp)`
`void` | `MontageMaker.makeMontage(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)`
`void` | `ImageCalculator.calculate(java.lang.String params, ImagePlus img1, ImagePlus img2)`
`void` | `FFTMath.doMath(ImagePlus imp1, ImagePlus imp2)`
`void` | `ContrastEnhancer.stretchHistogram(ImagePlus imp, double saturated)`
`void` | `ContrastEnhancer.equalize(ImagePlus imp)`

Constructors in ij.plugin with parameters of type ImagePlus
`ZProjector(ImagePlus imp)` Construction of ZProjector with image to be projected.

Uses of ImagePlus in ij.plugin.filter

Fields in ij.plugin.filter declared as ImagePlus
`protected ImagePlus` | `ParticleAnalyzer.imp`

Methods in ij.plugin.filter that return ImagePlus
`ImagePlus` | `Projector.doProjections(ImagePlus imp)`
`ImagePlus` | `Duplicater.duplicateStack(ImagePlus imp, java.lang.String newTitle)`
`static ImagePlus` | `Analyzer.getRedirectImage(ImagePlus currentImage)` Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as `currentImage`.

Methods in ij.plugin.filter with parameters of type ImagePlus
`int` | `ZAxisProfiler.setup(java.lang.String arg, ImagePlus imp)`
`int` | `XYWriter.setup(java.lang.String arg, ImagePlus imp)`
`void` | `XYWriter.saveXYCoordinates(ImagePlus imp)`
`int` | `Writer.setup(java.lang.String arg, ImagePlus imp)`
`int` | `UnsharpMask.setup(java.lang.String arg, ImagePlus imp)` Method to return types supported
`int` | `UnsharpMask.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)` Ask the user for the parameters
`int` | `Transformer.setup(java.lang.String arg, ImagePlus imp)`
`int` | `ThresholdToSelection.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Shadows.setup(java.lang.String arg, ImagePlus imp)`
`int` | `ScaleDialog.setup(java.lang.String arg, ImagePlus imp)`
`int` | `SaltAndPepper.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Rotator.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Rotator.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)`
`int` | `RoiWriter.setup(java.lang.String arg, ImagePlus imp)`
`void` | `RoiWriter.saveRoi(ImagePlus imp)`
`int` | `RGBStackSplitter.setup(java.lang.String arg, ImagePlus imp)`
`void` | `RGBStackSplitter.split(ImagePlus imp)` Splits the specified RGB image or stack into three 8-bit grayscale images or stacks.
`int` | `Resizer.setup(java.lang.String arg, ImagePlus imp)`
`int` | `RankFilters.setup(java.lang.String arg, ImagePlus imp)` Setup of the PlugInFilter.
`int` | `RankFilters.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)`
`int` | `Projector.setup(java.lang.String arg, ImagePlus imp)`
`void` | `Projector.doRGBProjections(ImagePlus imp)`
`ImagePlus` | `Projector.doProjections(ImagePlus imp)`
`int` | `Profiler.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Printer.setup(java.lang.String arg, ImagePlus imp)`
`int` | `PlugInFilter.setup(java.lang.String arg, ImagePlus imp)` This method is called once when the filter is loaded.
`int` | `ParticleAnalyzer.setup(java.lang.String arg, ImagePlus imp)`
`boolean` | `ParticleAnalyzer.analyze(ImagePlus imp)` Performs particle analysis on the specified image.
`boolean` | `ParticleAnalyzer.analyze(ImagePlus imp, ImageProcessor ip)` Performs particle analysis on the specified ImagePlus and ImageProcessor.
`int` | `MaximumFinder.setup(java.lang.String arg, ImagePlus imp)` Method to return types supported
`int` | `MaximumFinder.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)`
`int` | `LutViewer.setup(java.lang.String arg, ImagePlus imp)`
`int` | `LutApplier.setup(java.lang.String arg, ImagePlus imp)`
`int` | `LineGraphAnalyzer.setup(java.lang.String arg, ImagePlus imp)`
`void` | `LineGraphAnalyzer.analyze(ImagePlus imp)` Uses ImageJ's particle analyzer to extract a set of coordinate pairs from a digitized line graph.
`int` | `Info.setup(java.lang.String arg, ImagePlus imp)`
`java.lang.String` | `Info.getImageInfo(ImagePlus imp, ImageProcessor ip)`
`int` | `ImageProperties.setup(java.lang.String arg, ImagePlus imp)`
`int` | `ImageMath.setup(java.lang.String arg, ImagePlus imp)`
`int` | `GaussianBlur.setup(java.lang.String arg, ImagePlus imp)` Method to return types supported
`int` | `GaussianBlur.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)` Ask the user for the parameters
`int` | `FractalBoxCounter.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Filters.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Filler.setup(java.lang.String arg, ImagePlus imp)`
`void` | `Filler.drawLabel(ImagePlus imp, ImageProcessor ip, int count, java.awt.Rectangle r)`
`int` | `FFTFilter.setup(java.lang.String arg, ImagePlus imp)`
`int` | `FFTCustomFilter.setup(java.lang.String arg, ImagePlus imp)`
`int` | `ExtendedPlugInFilter.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)` This method is called after `setup(arg, imp)` unless the `DONE` flag has been set.
`int` | `EDM.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Duplicater.setup(java.lang.String arg, ImagePlus imp)`
`void` | `Duplicater.duplicate(ImagePlus imp)`
`ImagePlus` | `Duplicater.duplicateStack(ImagePlus imp, java.lang.String newTitle)`
`int` | `Convolver.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Convolver.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)`
`int` | `Calibrator.setup(java.lang.String arg, ImagePlus imp)`
`boolean` | `Calibrator.showDialog(ImagePlus imp)`
`void` | `Calibrator.calibrate(ImagePlus imp)`
`int` | `CalibrationBar.setup(java.lang.String arg, ImagePlus imp)`
`void` | `CalibrationBar.drawColorBar(ImagePlus imp, int x, int y)`
`int` | `BinaryFiller.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Binary.setup(java.lang.String arg, ImagePlus imp)`
`int` | `Benchmark.setup(java.lang.String arg, ImagePlus imp)`
`int` | `BackgroundSubtracter.setup(java.lang.String arg, ImagePlus imp)`
`int` | `AVIWriter.setup(java.lang.String arg, ImagePlus imp)`
`void` | `AVIWriter.writeImage(ImagePlus imp)`
`int` | `Analyzer.setup(java.lang.String arg, ImagePlus imp)`
`static ImagePlus` | `Analyzer.getRedirectImage(ImagePlus currentImage)` Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as `currentImage`.

Constructors in ij.plugin.filter with parameters of type ImagePlus
`Analyzer(ImagePlus imp)` Constructs a new Analyzer using the specified ImagePlus object and the system-wide measurement options and results table.
`Analyzer(ImagePlus imp, int measurements, ResultsTable rt)` Construct a new Analyzer using an ImagePlus object and private measurement options and results table.

Uses of ImagePlus in ij.plugin.frame

Methods in ij.plugin.frame with parameters of type ImagePlus
`void` | `RoiManager.add(ImagePlus imp, Roi roi, int n)` Adds the specified ROI to the list.

Uses of ImagePlus in ij.process

Constructors in ij.process with parameters of type ImagePlus
`StackStatistics(ImagePlus imp)`
`StackStatistics(ImagePlus imp, int nBins, double histMin, double histMax)`
`StackConverter(ImagePlus imp)`
`ImageConverter(ImagePlus imp)` Constructs an ImageConverter based on an ImagePlus object.

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